Difference between revisions of "HLab:Main"
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| + | [[Image:HardisonLabPhoto2007.jpg|thumb|Lab mates]] | ||
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| + | Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. '''This contains our [[hlab:Laboratory Protocols|laboratory protocols]] and other [[hlab:Resources|resources.]]''' | ||
| + | |||
| + | If you are a visitor and interested in the lab projects, please go this way to the [http://www.bx.psu.edu/~ross/ Hardison lab homepage.] If you are a member of this lab, you can use your login name and password to access our database: [[BX:HardisonData]] or view [[hlab:Hardison_Lab_Meetings|meeting notes.]] | ||
| + | |||
| + | By the way, if you are having some headache with R, python, herbie the server or MICROSOFT OFFICE , go to these pages to see whether we could provide you with some [[hlab:Software_Troubleshooting|help]]. | ||
| + | |||
| + | ==Servers== | ||
| + | [http://www.bx.psu.edu/~yong/ghp ChIP-chip] browser for predictions and associated info. | ||
| + | |||
| + | [http://herbie.bx.psu.edu:8888 Pinkie galaxy] for in-house tools by Ying Zhang. | ||
| + | |||
| + | [http://www.bx.psu.edu/~dcking/cladimo CladiMo] search tool for conserved motifs. | ||
| + | |||
| + | [http://www.bx.psu.edu/~dcking/mafgraph/mafbrowser.html MAF browser] - an interactive Flash tool for exploring MAF alignment files. | ||
| + | |||
| + | |||
| + | ==Resources== | ||
| + | |||
| + | ===Laboratory Protocols=== | ||
| + | |||
| + | *[[hlab:PCR]] | ||
| + | |||
| + | *[[hlab:Transient Transfection]] | ||
| + | |||
| + | *[[hlab:Harvest of Transfection Plates]] | ||
| + | |||
| + | *[[hlab:Large-scale Plasmid Isolation]] | ||
| + | |||
| + | *[[hlab:Northern Blot]] | ||
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| + | *[[hlab:Southern Blot]] | ||
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| + | *[[hlab:Reverse Transcription of RNA]] | ||
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| + | *[[hlab:Quick Genomic DNA Preparation]] | ||
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| + | *[[hlab:Quick Gel Extraction Kit]] | ||
| + | |||
| + | *[[hlab:Transfection of L1HYTK1L Cell]] | ||
| + | |||
| + | *[[hlab:ChIP]] | ||
| + | |||
| + | ===Software Troubleshooting=== | ||
| + | |||
| + | [[TimeSaver|Fixes]] for | ||
| + | |||
| + | 1. Illustrator | ||
| + | |||
| + | 2. Word/EndNote problems | ||
| + | |||
| + | 3. Turn Off DASHBOARD for Mac computers | ||
| + | |||
| + | === Methods === | ||
| + | Various techniques and approaches get re-invented frequently. This section is devoted to keep that from happening. | ||
| + | |||
| + | ==== Statistics ==== | ||
| + | |||
| + | *[[R notes]], [[Rcode FDR]] | ||
| + | |||
| + | *[[Ying]]'s [[UsefulCode|python page.]] | ||
| + | |||
| + | === Computing at BX=== | ||
| + | [[AFS]], [[Computing_resources]], [[Kerberos]], | ||
| + | |||
| + | === Wiki === | ||
| + | *[http://en.wikipedia.org/wiki/Wikipedia:Cheatsheet Wikipedia Cheatsheet] | ||
| + | *[[Icons]] | ||
| + | *[[Forcetoc]] | ||
| + | |||
| + | |||
| + | ---- | ||
| + | |||
| + | Or, if you just want to have some fun here, well, usually we are not joking during work, but check this: [[For Fun]] | ||
Revision as of 11:15, 29 April 2010
'"`UNIQ--acl-00000000-QINU`"'
Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. This contains our laboratory protocols and other resources.
If you are a visitor and interested in the lab projects, please go this way to the Hardison lab homepage. If you are a member of this lab, you can use your login name and password to access our database: BX:HardisonData or view meeting notes.
By the way, if you are having some headache with R, python, herbie the server or MICROSOFT OFFICE , go to these pages to see whether we could provide you with some help.
Contents
Servers
ChIP-chip browser for predictions and associated info.
Pinkie galaxy for in-house tools by Ying Zhang.
CladiMo search tool for conserved motifs.
MAF browser - an interactive Flash tool for exploring MAF alignment files.
Resources
Laboratory Protocols
Software Troubleshooting
Fixes for
1. Illustrator
2. Word/EndNote problems
3. Turn Off DASHBOARD for Mac computers
Methods
Various techniques and approaches get re-invented frequently. This section is devoted to keep that from happening.
Statistics
Computing at BX
AFS, Computing_resources, Kerberos,
Wiki
Or, if you just want to have some fun here, well, usually we are not joking during work, but check this: For Fun
