Difference between revisions of "HLab:Rscripts"
From CCGB
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Quantile normalization | Quantile normalization | ||
| − | *This can be used directly or as an example. It takes an input and output file names (tab-delimited files with header and row names). It is set up for RNA and adds 1.1 to the expression levels to avoid zeros before taking the log2(normalized expr). [[Media:normalize.r]] | + | *This can be used directly or as an example. It takes an input and output file names (tab-delimited files with header and row names). It is set up for RNA and adds 1.1 to the expression levels to avoid zeros before taking the log2(normalized expr). [[Media:normalize.r.txt]] |
Scatter plots for replicates | Scatter plots for replicates | ||
Revision as of 12:40, 24 October 2014
Miscellaneous R Scripts
Quantile normalization
- This can be used directly or as an example. It takes an input and output file names (tab-delimited files with header and row names). It is set up for RNA and adds 1.1 to the expression levels to avoid zeros before taking the log2(normalized expr). Media:normalize.r.txt
Scatter plots for replicates
PCA
GEDI
