Difference between revisions of "WWWGLS: Spring 2017"

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(→‎Schedule for Weekly Wednesday Wartik Genomics Lecture Series and Related Events: Spring Semester 2017)
(→‎Schedule for Weekly Wednesday Wartik Genomics Lecture Series and Related Events: Spring Semester 2017)
 
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| Wed Jan 25
 
| Wed Jan 25
 
| Shefali Setia and Bo Zhang<br>(Penn State University)
 
| Shefali Setia and Bo Zhang<br>(Penn State University)
−
| Title: Identifying genetic associations with variability in metabolic health and blood count laboratory values:  Diving into the quantitative traits by leveraging    longitudinal data from an EHR
+
| Title: Identifying genetic associations with variability in metabolic health and blood count laboratory values:  Diving into the quantitative traits by leveraging    longitudinal data from an EHR and Epigenetic Regulation in T-ALL by Ikaros
 
|-
 
|-
 
| Wed Feb 1
 
| Wed Feb 1
−
| Name: TBA<br>(Institution: TBA)
+
| Marzia Cremona<br>(Penn State University)
−
| Title: TBA
+
| Title: Functional Motif Discovery for “Omics” Curves
 
|-
 
|-
 
| Wed Feb 8
 
| Wed Feb 8
−
| A. Murat Eren<br>(The University of Chicago)
+
| A. Murat Eren<br>(The University of Chicago)<br>(Co-hosted by The Microbiome Center)
 
| Title: Genome-resolved metagenomics: A perfect mixture of opportunities and challenges
 
| Title: Genome-resolved metagenomics: A perfect mixture of opportunities and challenges
 
|-
 
|-
 
| Wed Feb 15
 
| Wed Feb 15
 
| Kasper Daniel Hansen<br>(Institution: Johns Hopkins University)
 
| Kasper Daniel Hansen<br>(Institution: Johns Hopkins University)
−
| Title: TBA
+
| Title: DNA methylation and chromatin accessibility in the normal human brain
 
|-
 
|-
 
| Wed Feb 22
 
| Wed Feb 22
 
| Thanh Le and Bruce Chen<br>(Penn State University)
 
| Thanh Le and Bruce Chen<br>(Penn State University)
−
| Title: TBA
+
| Title: Gut Microbiome Dynamics Under Differentially Fatty Diets AND Investigating L1 Transposition with Functional Data Analysis
 
|-
 
|-
 
| Wed Mar 1
 
| Wed Mar 1
 
| Ben Langmead<br>(Johns Hopkins University)
 
| Ben Langmead<br>(Johns Hopkins University)
−
| Title: TBA
+
| Title: Unlocking sequence data archives with scalable software and resources
 
|-
 
|-
 
| Wed Mar 15
 
| Wed Mar 15
 
| Michael DeGiorgio<br>(Penn State University)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628)
 
| Michael DeGiorgio<br>(Penn State University)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628)
−
| Title: TBA
+
| Title: Uncovering regions of ancestral positive selection with ancient and modern DNA
 
|-
 
|-
 
| Wed Mar 22
 
| Wed Mar 22
 
| Arjun Krishnan<br>(Michigan State University)
 
| Arjun Krishnan<br>(Michigan State University)
−
| Title: TBA
+
| Title: "Nobody knew health and disease could be so complicated” - Some integrative data-driven insights into underlying genetic mechanisms
 
|-
 
|-
 
| Wed Mar 29
 
| Wed Mar 29
−
| Naomi Yamada<br>(Penn State University)
+
| Naomi Yamada and Samarth Rangavittal<br>(Penn State University)
−
| Title: TBA
+
| Title: Characterizing DNA-protein crosslinking points and binding sub-types in ChIP-exo and Assembly and analysis of Y-linked data from great apes
 +
|-
 +
| Fri Mar 31
 +
| <font color=red>'''SPECIAL SEMINAR'''</font><br>Marc S Greenblatt<br>(University of Vermont College of Medicine)
 +
| Title: Pathogenic or Not?  Classifying Genetic Variants in Lynch Syndrome by Integrating In Vitro, Computational, and Other Evidence<br>(<font color=red>'''LOCATION/TIME: 501 Wartik Lab, 3:00pm - 4:00pm'''</font>)
 
|-
 
|-
 
| Mon Apr 3
 
| Mon Apr 3
 
| Jean-Luc Jannink<br>(Cornell University)<br>(Co-hosted with Department of Plant Biology)
 
| Jean-Luc Jannink<br>(Cornell University)<br>(Co-hosted with Department of Plant Biology)
−
| Title: TBA<br>(<font color=red>'''LOCATION/TIME: 108 Wartik Lab, 12:10 - 1:10pm'''</font>)
+
| Title: Genomic Selection and Purging Genetic Load in Cassava, An Outcrossing Clonally Ropagated Crop<br>(<font color=red>'''LOCATION/TIME: 108 Wartik Lab, 12:10 - 1:10pm'''</font>)
 
|-
 
|-
 
| Wed Apr 5
 
| Wed Apr 5
−
| Fereydoun Hormozdiari<br>(Univ. of California, Davis)
+
| Ross Hardison<br>(Penn State University)
−
| Title: TBA
+
| Title: Validated Systematic Integration of epigenomic data in hematopoiesis
 
|-
 
|-
 
| Wed Apr 12
 
| Wed Apr 12
 
| Jason Ernst<br>(University of California, Los Angeles)
 
| Jason Ernst<br>(University of California, Los Angeles)
−
| Title: TBA
+
| Title: Computational Approaches for Deciphering the Non-coding Human Genome
 
|-
 
|-
 
| Wed Apr 19
 
| Wed Apr 19
 
| Yogeshwar Kelkar<br>(University of Rochester)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628)
 
| Yogeshwar Kelkar<br>(University of Rochester)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628)
−
| Title: TBA
+
| Title: Evolutionary consequences of asexual reproduction on a wasp genome
 
|-
 
|-
 
| Wed Apr 26
 
| Wed Apr 26
 
| Divyanshi Srivastava and Tarik Salameh<br>(Penn State University)
 
| Divyanshi Srivastava and Tarik Salameh<br>(Penn State University)
−
| Titles: TBA
+
| Titles: Characterizing the role of hox transcription factors in specifying motor neuron identity and Machine Learning and  Pharmacogenomics in Multiple Sclerosis
 
|-
 
|-
 
| Wed May 3
 
| Wed May 3
 
| Yi Xing<br>(University of California, Los Angeles)
 
| Yi Xing<br>(University of California, Los Angeles)
−
| Title: TBA
+
| Title: Elucidating the Complexity of the Mammalian m6A Epitranscriptome
 
|-
 
|-
 
| Wed May 10
 
| Wed May 10
 
| Michael Wu<br>(Fred Hutchison Cancer Research Center )
 
| Michael Wu<br>(Fred Hutchison Cancer Research Center )
−
| Title: TBA
+
| Title: Community level analysis of microbiome profiling studies using similarity based methods
 
|-
 
|-
 
| Wed May 17
 
| Wed May 17
−
| Name: Laura Carrel<br>(Penn State Hershey Medical Center)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG624E)
+
| Laura Carrel<br>(Penn State Hershey Medical Center)<br>(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG624E)
−
| Title: TBA
+
| Title: Variable expression from the inactive X chromosome: identifying tissue and individual differences and role in traits
 
|-
 
|-
 
| Wed May 24
 
| Wed May 24
−
| Blair Zhang and Guanjue Xiang<br>(Penn State University)
+
| CANCELLED
−
| Title: TBA
+
|  
 
|}
 
|}
  

Latest revision as of 16:57, 17 May 2017

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Schedule for Weekly Wednesday Wartik Genomics Lecture Series and Related Events: Spring Semester 2017

Seminars are usually held on Wednesdays from 4:00-5:00 pm in the large commons area ("curved room") of 501 Wartik, unless otherwise noted. Coffee, tea, and cookies are served starting about 3:30 pm.


Date Presenter(s) Topic
Wed Jan 18   Siyang Zheng
(Penn State University)
(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628) 		Title: NGS for Liquid Biopsy – Analyses of Single Circulating Tumor Cells and Extracellular Vesicles from Blood Samples of Cancer Patients
Wed Jan 25 Shefali Setia and Bo Zhang
(Penn State University) 		Title: Identifying genetic associations with variability in metabolic health and blood count laboratory values: Diving into the quantitative traits by leveraging longitudinal data from an EHR and Epigenetic Regulation in T-ALL by Ikaros
Wed Feb 1 Marzia Cremona
(Penn State University) 		Title: Functional Motif Discovery for “Omics” Curves
Wed Feb 8 A. Murat Eren
(The University of Chicago)
(Co-hosted by The Microbiome Center) 		Title: Genome-resolved metagenomics: A perfect mixture of opportunities and challenges
Wed Feb 15 Kasper Daniel Hansen
(Institution: Johns Hopkins University) 		Title: DNA methylation and chromatin accessibility in the normal human brain
Wed Feb 22 Thanh Le and Bruce Chen
(Penn State University) 		Title: Gut Microbiome Dynamics Under Differentially Fatty Diets AND Investigating L1 Transposition with Functional Data Analysis
Wed Mar 1 Ben Langmead
(Johns Hopkins University) 		Title: Unlocking sequence data archives with scalable software and resources
Wed Mar 15 Michael DeGiorgio
(Penn State University)
(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628) 		Title: Uncovering regions of ancestral positive selection with ancient and modern DNA
Wed Mar 22 Arjun Krishnan
(Michigan State University) 		Title: "Nobody knew health and disease could be so complicated” - Some integrative data-driven insights into underlying genetic mechanisms
Wed Mar 29 Naomi Yamada and Samarth Rangavittal
(Penn State University) 		Title: Characterizing DNA-protein crosslinking points and binding sub-types in ChIP-exo and Assembly and analysis of Y-linked data from great apes
Fri Mar 31 SPECIAL SEMINAR
Marc S Greenblatt
(University of Vermont College of Medicine) 		Title: Pathogenic or Not? Classifying Genetic Variants in Lynch Syndrome by Integrating In Vitro, Computational, and Other Evidence
(LOCATION/TIME: 501 Wartik Lab, 3:00pm - 4:00pm)
Mon Apr 3 Jean-Luc Jannink
(Cornell University)
(Co-hosted with Department of Plant Biology) 		Title: Genomic Selection and Purging Genetic Load in Cassava, An Outcrossing Clonally Ropagated Crop
(LOCATION/TIME: 108 Wartik Lab, 12:10 - 1:10pm)
Wed Apr 5 Ross Hardison
(Penn State University) 		Title: Validated Systematic Integration of epigenomic data in hematopoiesis
Wed Apr 12 Jason Ernst
(University of California, Los Angeles) 		Title: Computational Approaches for Deciphering the Non-coding Human Genome
Wed Apr 19 Yogeshwar Kelkar
(University of Rochester)
(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG628) 		Title: Evolutionary consequences of asexual reproduction on a wasp genome
Wed Apr 26 Divyanshi Srivastava and Tarik Salameh
(Penn State University) 		Titles: Characterizing the role of hox transcription factors in specifying motor neuron identity and Machine Learning and Pharmacogenomics in Multiple Sclerosis
Wed May 3 Yi Xing
(University of California, Los Angeles) 		Title: Elucidating the Complexity of the Mammalian m6A Epitranscriptome
Wed May 10 Michael Wu
(Fred Hutchison Cancer Research Center ) 		Title: Community level analysis of microbiome profiling studies using similarity based methods
Wed May 17 Laura Carrel
(Penn State Hershey Medical Center)
(Hosted by: The Center for Medical Genomics with videoconference connection to Hershey room CG624E) 		Title: Variable expression from the inactive X chromosome: identifying tissue and individual differences and role in traits
Wed May 24 CANCELLED


Other Semesters:

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