File list
This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 13:16, 23 August 2013 | Labmtg040313cak.pdf (file) |  |
4.31 MB | Lab meeting April 3, 2013 by Cheryl | 1 |
| 13:49, 23 August 2013 | Some basic Unix commands.pdf (file) | |
4.92 MB | lab meeting on basic Unix commands Belinda | 1 |
| 09:41, 28 August 2013 | File reorganization and our database.pdf (file) | |
6.21 MB | lab presentation on file reorganization and the hlab database | 1 |
| 19:26, 31 October 2013 | GenomeInformatics2013Giardine.pdf (file) | |
4.11 MB | Changed mapper for RNA-seq | 2 |
| 10:19, 2 June 2014 | MacsAndCufflinksVersions.pdf (file) | |
19.89 MB | Comparing macs vs macs2 and cufflinks 2.1 vs cufflinks 2.2 | 1 |
| 11:38, 24 October 2014 | Normalize.r.txt (file) |  |
423 bytes | This is a R script despite the .txt end. It is used to normalize RNA-seq data. | 1 |
| 11:49, 24 October 2014 | PlotPairs.r.txt (file) | |
1 KB | R script to produce scatter plots to compare replicates. Must edit file names and dimensions. | 1 |
| 11:52, 24 October 2014 | PlotPairsDensity.r.txt (file) | |
1 KB | R script to plot scatter plots for comparing replicates. This changes the color of the dot based on the density of points. Must edit file names and dimensions to use. | 1 |
| 11:04, 19 November 2014 | HscCmpGmpMep.pdf (file) | |
4.06 MB | Slides with initial graphs looking at RNA data for HSC, CMP, GMP, MEP | 1 |
| 16:31, 19 December 2014 | Kmeans.r.txt (file) | |
2 KB | This does kmeans clustering then plots a heatmap and prints a text dump of the clusters. | 1 |
| 16:38, 19 December 2014 | PeakHeatmap.r.txt (file) | |
6 KB | This is an example script for plotting a heatmap of a data matrix with many different types of data. | 1 |
| 16:50, 19 December 2014 | Pca.r.txt (file) | |
1 KB | This plots a bar plot of the variance explained by the principle components, and grapsh of the first several components. | 1 |
| 10:54, 7 January 2015 | Gedi.r.txt (file) | |
1 KB | Print high resolution GEDI maps from mapCentroids.txt | 1 |
| 11:07, 7 January 2015 | BasicStats.txt (file) | |
1 KB | Compute min, max, mean, median on a column of numbers. | 1 |
| 11:15, 7 January 2015 | Line-ends.txt (file) | |
782 bytes | Convert between line-end encodings. | 1 |
| 18:14, 11 February 2015 | SonicationEval.pdf (file) | |
1.92 MB | 1 | |
| 12:45, 26 February 2015 | Vison.pdf (file) | |
4.55 MB | Slides from Center's weekly seminar Feb 18, 2015 | 1 |
| 11:22, 1 April 2015 | HardisonLabDiskSpace.pdf (file) | |
2.22 MB | Overview of disk space used and available | 1 |
