Difference between revisions of "HLab:Main"
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Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. '''This contains our laboratory protocols and other resources.''' | Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. '''This contains our laboratory protocols and other resources.''' | ||
| − | If you are a visitor and interested in the lab projects, please go this way to the [http://www.bx.psu.edu/~ross/ Hardison lab homepage.] If you are a member of this lab, you can use your login name and password to access our database: [[HLab:HardisonData]] or view [[hlab:Hardison_Lab_Meetings|meeting notes.]] | + | If you are a visitor and interested in the lab projects, please go this way to the [http://www.bx.psu.edu/~ross/ Hardison lab homepage.] <br />If you are a member of this lab, you can use your login name and password to access our database: [[HLab:HardisonData]] or view [[hlab:Hardison_Lab_Meetings|meeting notes.]] |
| + | ==Resources== | ||
| − | ==Servers== | + | ===Servers=== |
[http://cladimo.bx.psu.edu/ CladiMo] search tool for conserved motifs. | [http://cladimo.bx.psu.edu/ CladiMo] search tool for conserved motifs. | ||
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[https://mery.genome-browser.bx.psu.edu Mery Browser] - login required, a mirror like above with unpublished data | [https://mery.genome-browser.bx.psu.edu Mery Browser] - login required, a mirror like above with unpublished data | ||
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===Seminars=== | ===Seminars=== | ||
| − | [http://csg.psu.edu/seminars/weekly-genomics-seminar Weekly Genomics Seminar] | + | [http://csg.psu.edu/seminars/weekly-genomics-seminar Weekly Genomics Seminar schedule] |
===Laboratory Protocols=== | ===Laboratory Protocols=== | ||
Latest revision as of 09:24, 2 April 2015
Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. This contains our laboratory protocols and other resources.
If you are a visitor and interested in the lab projects, please go this way to the Hardison lab homepage.
If you are a member of this lab, you can use your login name and password to access our database: HLab:HardisonData or view meeting notes.
Contents
Resources
Servers
CladiMo search tool for conserved motifs.
MAF browser - an interactive Flash tool for exploring MAF alignment files.
BX Browser - a mirror of the UCSC Genome Browser with tracks from Hardison lab added
Mery Browser - login required, a mirror like above with unpublished data
Seminars
Weekly Genomics Seminar schedule
Laboratory Protocols
Methods
Various techniques and approaches get re-invented frequently. This section is devoted to keep that from happening.
- Illumina post processing steps
- Workflows for processing data workflows
- Quality metrics description
- Using GEDI maps
- File sharing or transfer methods login required
- R scripts
- Perl scripts
Publications and Posters
- Workflow poster for Genome Informatics 2013
- Hlab:HardisonData login required
- lab meetings login required
Computing at BX
Wiki
Or, if you just want to have some fun here, well, usually we are not joking during work, but check this: For Fun
