Difference between revisions of "HLab:Main"

Revision as of 11:00, 7 January 2015

Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. This contains our laboratory protocols and other resources.

If you are a visitor and interested in the lab projects, please go this way to the Hardison lab homepage. If you are a member of this lab, you can use your login name and password to access our database: HLab:HardisonData or view meeting notes.

Servers

CladiMo search tool for conserved motifs.

MAF browser - an interactive Flash tool for exploring MAF alignment files.

BX Browser - a mirror of the UCSC Genome Browser with tracks from Hardison lab added

Mery Browser - login required, a mirror like above with unpublished data

Resources

Laboratory Protocols

• hlab:PCR

• hlab:Transient Transfection

• hlab:Harvest of Transfection Plates

• hlab:Large-scale Plasmid Isolation

• hlab:Northern Blot

• hlab:Southern Blot

• hlab:Reverse Transcription of RNA

• hlab:Quick Genomic DNA Preparation

• hlab:Quick Gel Extraction Kit

• hlab:Transfection of L1HYTK1L Cell

• hlab:ChIP

Methods

Various techniques and approaches get re-invented frequently. This section is devoted to keep that from happening.

• Illumina post processing steps
• Workflows for processing data workflows
• Quality metrics description
• Using GEDI maps
• File sharing or transfer methods login required
• R scripts
• Perl scripts

Publications and Posters

• Workflow poster for Genome Informatics 2013
• Hlab:HardisonData login required

Computing at BX

• BX:Main, Ganglia

Wiki

• Wikipedia Cheatsheet

Or, if you just want to have some fun here, well, usually we are not joking during work, but check this: For Fun