Difference between revisions of "SLab:File System Layout"
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Revision as of 14:57, 24 March 2010
Contents
/afs/bx.psu.edu/depot/data/schuster_lab
The Schuster Lab's data can be found in the /afs/bx.psu.edu/depot/data/schuster_lab directory.
Sequencing Data
- /afs/bx.psu.edu/depot/data/schuster_lab/sequencing
archive
- /afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/
- 454/
- by_date/
- flat/
- by_project/
- illumina/
- by_date/
- flat/
- by_project/
- 454/
The sequencing archive directory contains a read-only archive of all sequencing runs and contains a sub directory for each sequencing platform. Within each sequencing platform directory, runs are organized by the date the run was started.
Directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/by_date/2010/2010_01_22/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9
Directory for the Illumina 100201_HWUSI-EAS610_0006 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_date/2010/2010_02_01/100201_HWUSI-EAS610_0006
In addition, each sequencing platform directory contains a flat/ sub directory that contains symbolic links to every run for that platform.
flat/ directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/flat/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9
flat/ directory for the Illumina 100201_HWUSI-EAS610_0006 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/flat/100201_HWUSI-EAS610_0006
The by_project/ directories can be used to organize all runs for a specific project
For the chestnut project:
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_project/chestnut/runs/100211_HWUSI-EAS610_0005
