Difference between revisions of "SLab:File System Layout"
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= Sequencing Data = | = Sequencing Data = | ||
| + | * /afs/bx.psu.edu/depot/data/schuster_lab/sequencing | ||
| − | + | Access to all of the Schuster Lab's sequencing data is through the sequencing directory. This directory contains archived run directories as well as directories for runs that are currently in progress. | |
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== archive == | == archive == | ||
Revision as of 14:59, 24 March 2010
Contents
/afs/bx.psu.edu/depot/data/schuster_lab
The Schuster Lab's data can be found in the /afs/bx.psu.edu/depot/data/schuster_lab directory.
Sequencing Data
- /afs/bx.psu.edu/depot/data/schuster_lab/sequencing
Access to all of the Schuster Lab's sequencing data is through the sequencing directory. This directory contains archived run directories as well as directories for runs that are currently in progress.
archive
- /afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/
- 454/
- by_date/
- flat/
- by_project/
- illumina/
- by_date/
- flat/
- by_project/
- 454/
The sequencing archive directory contains a read-only archive of all sequencing runs and contains a sub directory for each sequencing platform. Within each sequencing platform directory, runs are organized by the date the run was started.
Directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/by_date/2010/2010_01_22/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9
Directory for the Illumina 100201_HWUSI-EAS610_0006 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_date/2010/2010_02_01/100201_HWUSI-EAS610_0006
In addition, each sequencing platform directory contains a flat/ sub directory that contains symbolic links to every run for that platform.
flat/ directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/flat/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9
flat/ directory for the Illumina 100201_HWUSI-EAS610_0006 run.
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/flat/100201_HWUSI-EAS610_0006
The by_project/ directories can be used to organize all runs for a specific project
For the chestnut project:
/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_project/chestnut/runs/100211_HWUSI-EAS610_0005
