Difference between revisions of "PhiX:Recipes"
| Line 1: | Line 1: | ||
| − | '''HIGH-SPEED GEL ELECTROPHORESIS----'''<br> | + | '''HIGH-SPEED GEL ELECTROPHORESIS--------'''<br> |
'''SB Buffer'''<br> | '''SB Buffer'''<br> | ||
45g boric acid<br> | 45g boric acid<br> | ||
| Line 5: | Line 5: | ||
water to 1 litre | water to 1 litre | ||
| − | '''PHAGE ELUTION'''<br> | + | |
| + | '''PHAGE ELUTION--------'''<br> | ||
'''BE Buffer (50mM Na<sub>2</sub>B<sub>4</sub>O<sub>7</sub>; 5.0mM EDTA)'''<br> | '''BE Buffer (50mM Na<sub>2</sub>B<sub>4</sub>O<sub>7</sub>; 5.0mM EDTA)'''<br> | ||
19.1g Na<sub>2</sub>B<sub>4</sub>O<sub>7</sub>.10H<sub>2</sub>O<br> | 19.1g Na<sub>2</sub>B<sub>4</sub>O<sub>7</sub>.10H<sub>2</sub>O<br> | ||
| Line 12: | Line 13: | ||
| − | '''PHAGE GROWTH----'''<br> | + | '''PHAGE GROWTH--------'''<br> |
'''LB Buffer'''<br> | '''LB Buffer'''<br> | ||
10g tryptone<br> | 10g tryptone<br> | ||
| Line 32: | Line 33: | ||
| − | '''PHAGE STORAGE/DILUTION----'''<br> | + | '''PHAGE STORAGE/DILUTION--------'''<br> |
'''HFB Buffer (60mM NH<sub>4</sub>Cl; 90mM NaCl; 0.1M KCl; 0.1M Tris-HCl (pH 7.4); 1.0mM MgSO<sub>4</sub>; 1.0mM CaCl<sub>2</sub>)'''<br> | '''HFB Buffer (60mM NH<sub>4</sub>Cl; 90mM NaCl; 0.1M KCl; 0.1M Tris-HCl (pH 7.4); 1.0mM MgSO<sub>4</sub>; 1.0mM CaCl<sub>2</sub>)'''<br> | ||
''For 500ml 10× stock:''<br> | ''For 500ml 10× stock:''<br> | ||
| Line 47: | Line 48: | ||
| − | '''NUCLEIC ACID SEPARATION----'''<br> | + | '''NUCLEIC ACID SEPARATION--------'''<br> |
'''Tris-saturated Phenol with antioxidant (with 100ml phenol)'''<br> | '''Tris-saturated Phenol with antioxidant (with 100ml phenol)'''<br> | ||
add 100mg 8-hydroxyquinoline (i.e., 0.1% w/v)<br> | add 100mg 8-hydroxyquinoline (i.e., 0.1% w/v)<br> | ||
| Line 54: | Line 55: | ||
| − | '''COMPONENT SOLUTIONS----'''<br> | + | '''COMPONENT SOLUTIONS--------'''<br> |
'''EDTA stock (0.5M)'''<br> | '''EDTA stock (0.5M)'''<br> | ||
use disodium salt and pH to 8 with NaOH | use disodium salt and pH to 8 with NaOH | ||
Revision as of 18:33, 6 August 2013
HIGH-SPEED GEL ELECTROPHORESIS--------
SB Buffer
45g boric acid
8g sodium hydroxide pellets
water to 1 litre
PHAGE ELUTION--------
BE Buffer (50mM Na2B4O7; 5.0mM EDTA)
19.1g Na2B4O7.10H2O
1.86g EDTA (disodium salt)
water to 1 litre
PHAGE GROWTH--------
LB Buffer
10g tryptone
5g yeast extract
10g NaCl
water to 1 litre, mix and autoclave
after autoclaving add CaCl2 to 2mM (2ml 1M per litre) and MgCl2 to 10mM (10ml 1M per litre)
For plate agar: add 15g Bacto brand agar per litre; no need to add salts
For top agar: add 7g Bacto brand agar per litre; after autoclaving add CaCl2 (to 2mM) and MgCl<2> (to 10mM)
Note: Bentley Fane add CaCl2 to 5mM
PHAGE STORAGE/DILUTION--------
HFB Buffer (60mM NH4Cl; 90mM NaCl; 0.1M KCl; 0.1M Tris-HCl (pH 7.4); 1.0mM MgSO4; 1.0mM CaCl2)
For 500ml 10× stock:
125ml of 2.0 M Tris-HCl (pH 7.3) -- surely 250ml?
15g NH4Cl
2.5g NaCl
25g KCl
5.0ml 1.0 M MgSO4
5.0ml 1.0M CaCl2
water up to 500ml
For working solution: dilute to 1× in water and autoclave
NUCLEIC ACID SEPARATION--------
Tris-saturated Phenol with antioxidant (with 100ml phenol)
add 100mg 8-hydroxyquinoline (i.e., 0.1% w/v)
add equilibration buffer (-> pH 7.9) - 6.5ml of this in Sigma kit
add 130ul 2-mercaptoethanol (0.2% of buffer phase)
COMPONENT SOLUTIONS--------
EDTA stock (0.5M)
use disodium salt and pH to 8 with NaOH
SDS 20%
pre-bought - avoids fine powder
Tris-HCl stock (1M)
pH to 8 with HCl
Pronase to 20mg/ml
dissolve in nuclease-free water and store at -20oC
10 X PE1
200mM Tris pH 7.5
100mM MgCl2
200 mM NaCl
10 mM DTT
10 X PE2
200 mM Tris pH 7.5
100 mM MgCl2
100 mM DTT
