HLab:Main

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Lab mates

Hi, the is the wiki "HOME" for Hardison Lab. Everyone is welcome to edit it. This contains our laboratory protocols and other resources.

If you are a visitor and interested in the lab projects, please go this way to the Hardison lab homepage. If you are a member of this lab, you can use your login name and password to access our database: HLab:HardisonData or view meeting notes.

By the way, if you are having some headache with R, python, herbie the server or MICROSOFT OFFICE , go to these pages to see whether we could provide you with some help.

Servers

ChIP-chip browser for predictions and associated info.

Pinkie galaxy for in-house tools by Ying Zhang.

CladiMo search tool for conserved motifs.

MAF browser - an interactive Flash tool for exploring MAF alignment files.

Resources

Laboratory Protocols

• hlab:PCR

• hlab:Transient Transfection

• hlab:Harvest of Transfection Plates

• hlab:Large-scale Plasmid Isolation

• hlab:Northern Blot

• hlab:Southern Blot

• hlab:Reverse Transcription of RNA

• hlab:Quick Genomic DNA Preparation

• hlab:Quick Gel Extraction Kit

• hlab:Transfection of L1HYTK1L Cell

• hlab:ChIP

Software Troubleshooting

Fixes for

1. Illustrator

2. Word/EndNote problems

3. Turn Off DASHBOARD for Mac computers

Methods

Various techniques and approaches get re-invented frequently. This section is devoted to keep that from happening.

• Illumina post processing Hlab:steps

Statistics

• R notes, Rcode FDR

• Ying's python page.

Computing at BX

AFS, Computing_resources, Kerberos,

Wiki

• Wikipedia Cheatsheet
• Icons
• Forcetoc

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Or, if you just want to have some fun here, well, usually we are not joking during work, but check this: For Fun