SLab:File System Layout

/afs/bx.psu.edu/depot/data/schuster_lab

The Schuster Lab's data can be found in the /afs/bx.psu.edu/depot/data/schuster_lab directory.

Sequencing Data

• /afs/bx.psu.edu/depot/data/schuster_lab/sequencing

archive

• /afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/
  • 454/
    • by_date/
    • flat/
    • by_project/
  • illumina/
    • by_date/
    • flat/
    • by_project/

The sequencing archive directory contains a read-only archive of all sequencing runs and contains a sub directory for each sequencing platform. Within each sequencing platform directory, runs are organized by the date the run was started.

Directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.

/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/by_date/2010/2010_01_22/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9

Directory for the Illumina 100201_HWUSI-EAS610_0006 run.

/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_date/2010/2010_02_01/100201_HWUSI-EAS610_0006

In addition, each sequencing platform directory contains a flat/ sub directory that contains symbolic links to every run for that platform.

flat/ directory for the 454 R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9 run.

/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/454/flat/R_2010_01_22_16_12_03_FLX11080447_John_ChineseChestnut_Run9

flat/ directory for the Illumina 100201_HWUSI-EAS610_0006 run.

/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/flat/100201_HWUSI-EAS610_0006

The by_project/ directories can be used to organize all runs for a specific project

For the chestnut project:

/afs/bx.psu.edu/depot/data/schuster_lab/sequencing/archive/illumina/by_project/chestnut/runs/100211_HWUSI-EAS610_0005